Python bindings for my custom model

DmitriyMarin — Wed, 28 Nov 2018 12:32:27 GMT

To update the topic and for information:
If you are looking for instructions on how to create Python bindings for your SAMSON Extension, please refer to the Developer Guide: Creation of Python Bindings for SAMSON Extensions.

Problem of graphics card after SAMSON installation on Ubuntu 18.04 (Intel processors)

DmitriyMarin — Mon, 15 Apr 2019 14:41:03 GMT

Hello @Robert ,
Thanks to your feedback, we have fixed the issue in SAMSON when using Intel integrated graphics processor. You can try installing SAMSON.

Build a Debug mode on linux

DmitriyMarin — Thu, 29 Nov 2018 13:58:05 GMT

Good luck @Laëtitia !
You can check https://github.com/1A-OneAngstrom/SAMSON-Developer-Tutorials/tree/develop for some SAMSON Elements Samples. We will be adding more soon.

Feel free to ask questions!

Adenita installation

DmitriyMarin — Sun, 29 Mar 2020 16:05:52 GMT

Dear @charlie,

For now, Adenita is provided only for SAMSON with version not higher than 0.8.5, (see Latest versions section on the module's web-page). So, to use Adenita you will need to install SAMSON 0.8.5.

You can request the newer version from the Adenita developer ( @Elisa ) here: https://forum.samson-connect.net/topic/139/user-support-adenita .

Qt dependencies for Windows 10

Elisa — Thu, 17 Jan 2019 09:22:02 GMT

Hi Dmitriy,
My CMakeLists for the Python Bindings version is like you posted above, so I'm not linking in the debug mode. My other branches don't have any reference to Python in the CMakeLists, so they are not linking neither.

Autodock Vina Extended problem

Sherif 0 — Sun, 27 Dec 2020 14:03:59 GMT

Thanks this is very good to know

SAMSON with hybrid graphics cards (Intel/Nvidia)

DmitriyMarin — Thu, 28 Feb 2019 17:10:53 GMT

Dear @Ivan ,
Thanks to issues raised on the forum, we have fixed the issue in SAMSON causing problems with the viewport when using Intel integrated graphics processor. This issue might have been causing the problem you have posted in this thread. The new installation of SAMSON should resolve the issue.

Docking results export

HUMERA — Fri, 08 May 2020 12:53:40 GMT

Dear @dmitriymarin thank you very much. It works.

Changelog for developers

Elisa — Tue, 25 Jun 2019 07:08:42 GMT

That is great!! Looking forward to it!

Serialization/Unserialization issues

Elisa — Mon, 04 Mar 2019 13:44:32 GMT

Hi,

I think I found the problem. Some initialization functions in the constructor of my class were overriding the unserialization. I tried to make a quick fix but when I do static casts in the unserialize function, SAMSON is crashing, so I will modify my constructor and check, it will take a bit though.

Thanks for your help!

Installing or running SAMSON on Ubuntu 17.04 and later versions

Subhajig — Thu, 29 Mar 2018 10:26:32 GMT

Installation is done.

GROMACS wizard - Letal Warning during NPT Equilibration step

DmitriyMarin — Fri, 06 Dec 2019 11:17:41 GMT

@carmine Thank you very much for your feedback!

We will add other box types in one of the next updates of the GROMACS Wizard.

Options provided in the Additional parameters have bigger priority then options specified in the GUI. It is true, it would be nice to highlight them in some way.

Install fails for Linux

DmitriyMarin — Mon, 29 Jul 2019 14:37:14 GMT

@elisa A common problem due to Windows being case-insensitive. :)

SAMSON crashes while opening pdb files

DmitriyMarin — Wed, 10 Apr 2019 14:40:01 GMT

Dear @Radoslaw ,
We have fixed an issue in SAMSON which was causing a problem with OpenGL context on Intel integrated graphics processors. We hope it might as well resolve the issue you had and we would be grateful if you could try re-installing SAMSON to check whether it fixes it.

Load and visualize a xyz trajectory frame by frame

DmitriyMarin — Mon, 12 Apr 2021 19:25:45 GMT

Dear @Luis ,

Great! Thanks for checking and for reporting the issue in the first place!

Hello everyone ,i just installed Samson on windows but when i try starting the application i got a message...

ZEUGMA — Tue, 31 Mar 2020 15:57:28 GMT

Thank you.I will contact.

Installation of Python scripting element

DmitriyMarin — Fri, 04 Jan 2019 20:40:06 GMT

Great! Diana, thank you very much for providing good descriptions of your problem and solution - it might help others experiencing the same problem.

Sorry for the issue. Yes, the Python version is important since the Python Scripting Element is linked to a particular version of the Python library.

Getting atoms inside a .stl object

Tom 1 — Thu, 12 Mar 2026 09:06:08 GMT

This is going to be so cool. It will allow me to make parts so much faster, and parts can be made larger than in NE1. Perhaps Z88 would make a good extension to do exciting stuff with meshes inside SAMSON. https://en.wikipedia.org/wiki/Z88_FEM_software

SAMSON cannot reach samson-connect under VPN

Aydin — Thu, 15 Aug 2024 15:11:59 GMT

thank you

Temperature color schemes

Stephane — Thu, 30 Nov 2017 13:25:13 GMT

Sorry, should have mentioned that. Great!

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