<![CDATA[GROMACS Wizard issue]]>This new topic is used to move a post from another topic.

]]>https://forum.samson-connect.net/topic/120/gromacs-wizard-issueRSS for NodeMon, 16 Mar 2026 06:18:43 GMTWed, 25 Sep 2019 12:26:43 GMT60<![CDATA[Reply to GROMACS Wizard issue on Wed, 25 Sep 2019 15:31:21 GMT]]>It is saying it as a problem. Backing up of file is working anymore. Rest of the log is normal but it got stuck at this point and then nothing works.

]]>https://forum.samson-connect.net/post/630https://forum.samson-connect.net/post/630Wed, 25 Sep 2019 15:31:21 GMT<![CDATA[Reply to GROMACS Wizard issue on Wed, 25 Sep 2019 12:30:54 GMT]]>Hi Sudhir,

"Sorry couldn't backup C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp to ./#C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp.1# "

This should be a warning, or it says you it is an error ?

For:
"8 out of 8 lines of specbond.dat converted successfully
Opening force field file ./amber99sb-ildn.ff/aminoacids.arn
Opening force field file ./amber99sb-ildn.ff/dna.arn
Opening force field file ./amber99sb-ildn.ff/rna.arn"

It seems this is normal. Could you send us the whole log please ?

]]>https://forum.samson-connect.net/post/629https://forum.samson-connect.net/post/629Wed, 25 Sep 2019 12:30:54 GMT<![CDATA[Reply to GROMACS Wizard issue on Wed, 25 Sep 2019 08:52:42 GMT]]>My Gromacs session is not working properly. It is always giving the same error.
Sorry couldn't backup C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp to ./#C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp.1#
8 out of 8 lines of specbond.dat converted successfully
Opening force field file ./amber99sb-ildn.ff/aminoacids.arn
Opening force field file ./amber99sb-ildn.ff/dna.arn
Opening force field file ./amber99sb-ildn.ff/rna.arn

]]>https://forum.samson-connect.net/post/627https://forum.samson-connect.net/post/627Wed, 25 Sep 2019 08:52:42 GMT