Thank you, Stephan. I will give it a try.
Posts made by Eva
RE: Setting pivot point in Arap path
Hi Dimitriy, Yes, there is a fixed part. I prepared the two conformations so the part that shouldn't move is overlapped in the two conformation. Still, that part moves too before returning to the same place.
I unchecked the Perform alignment option as that is definitely not what I want.
I'll try what you suggested and report back. Thanks.
Setting pivot point in Arap path
I am trying to simulate a path for a protein where the two conformations are roughly 90 degrees with respect to each other (like in an L). The pivot point is where the two arms meet. However, when I look at the resulting path computed by Arap, it moves the protein through a trajectory where the pivot point is roughly in the middle, creating an X before it moves to the final position. Since the protein is normally anchored in the membrane, the part close to the membrane should not move.
Is it possible to define part of the protein that should stay in place?