@dmitriymarin Got it. Thank you.
Posts made by HUMERA
RE: Ligand Receptor Interaction
Thank you for your quick response.
I followed these steps but still certain atoms appear, and those atoms were hydrogen atoms. I resolved this issue by removing all hydrogen atoms from structure. But it is not a good solution since sometimes we have to display hydrogen atoms to indicate hydrogen bond.
Ligand Receptor Interaction
I want to know if it is possible to visualise interaction like hydrogen bonding between ligand and receptor.
One more thing is that when I expand selection to 'side chains' within 6 angstrom of selected ligand, and then apply Licorice visual model. It displays few atoms as well along with side chains.
In short I want to display the side chains which are interacting with ligand, or which act as a binding site.
Looking forward to the response.
RE: Docking results export
Whenever I try to export image in the specified directory. It shows button as 'OPEN' instead of 'SAVE'. Moreover it DOES NOT save file. Check out this functionality.
Moreover AutoDock Vina results file should contain separate columns for Score, RMSD etc..