Autodock Vina PDBQT generation
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Hi, I am using the Autodock Vina extension and I was wondering how input files (both for receptor and ligands) are converted in PDBQT format before docking. Thanks a lot!
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Dear @Serena ,
The AutoDock Vina Extended module generates PBDQT files for you based on the chosen receptor[s] and ligand[s] and their flexibility (rotatable bonds). -
Dear Dmitriy,
I was more thinking about the conversion procedure specifically (e.g., openbabel). Thank you! -
Dear @Serena ,
No, we do not use Open Babel or anything else for that. It is done by the AutoDock Vina Extended module.
