Install fails for Linux
-
Can you please check if it installs well inside ~/.OneAngstrom/SAMSON/DEVELOPER/Elements/{UUID of your element}
The line inside KEY_SOFTWARE_INFO.conf containing KEY_DEVELOPPER_DATA_PATH refers to this path : ~/.OneAngstrom/SAMSON/DEVELOPER ?
Jocelyn
-
Yes, it is installed there, and that's the path where KEY_DEVELOPPER_DATA_PATH is pointed too (I also left KEY_DEVELOPER_DATA_PATH pointing there, just in case).
Elisa
-
First : make sure theses variables contains the full path and not ~/.....
Second : Not sure at all, did you reboot after modifying the conf file? I don't know how linux deals with internaly.Jocelyn
-
Hi,
Yes, the variables contain the full path. I rebooted and reinstalled the SDK, just in case (modified again the cmake file), but still it is not working for my App or for a newly created App. I am using 0.7.0, by the way, and Ubuntu 16.04 LTS.
Edit: here is what's log to the console when I run the SDK, no mention to the developed Apps:
libpng warning: iCCP: known incorrect sRGB profile =============== SBGPath summary infos ================ =============== > SBGPath::getSAMSONPath() = /home/user/OneAngstrom/SAMSON-Application/0.7.0 > SBGPath::getSDKPath() = . =============== > SBGPath::getUserDataPath() = /home/user/Documents/OneAngstrom/SAMSON > SBGPath::getUserElementPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Elements > SBGPath::getUserElementDataPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Data/Elements > SBGPath::getUserDownloadedElementPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Download/Elements =============== > SBGPath::getDevelopperDataPath() = > SBGPath::getDevelopperElementPath() = /Elements > SBGPath::getDevelopperElementPackagedPath() = /Connect/Elements =============== > SBGPath::getBinaryPath() = ./SAMSON-Debug/Binaries =============== > SBGPath::getCurrentSkinPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default > SBGPath::getCursorPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Cursors > SBGPath::getIconPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Icons > SBGPath::getImagePath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Images > SBGPath::getSoundPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Sounds > SBGPath::getSplashScreenPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/SplashScreens > SBGPath::getStylePath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/StyleSheets =============== > SBGPath::getInterfacePath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Interface > SBGPath::getScratchPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch > SBGPath::getScratchElementPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements > SBGPath::getScratchUpdatesPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Updates > SBGPath::getShaderPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Shaders > SBGPath::getTranslationPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Translations =============== SBGPath summary infos ================ "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Cursors" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Icons" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Elements" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Shaders" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Sounds" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/SplashScreens" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/StyleSheets" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Translations" Disabling SBIWebService SBIWebService::downloadElementXMLFile : WebService is disabled abort ============================================================================= Allowed elements ids in database: 1 -> "06485695-DEE2-1383-A575-E5AABA05DCCD" 2 -> "0808A8EF-125F-1382-18D4-65B7997BB794" 3 -> "154ACCDA-8950-C6B2-7456-DAB6BA82AA5D" 4 -> "385FE362-ADFD-CE55-95C0-4E63560EFA29" 5 -> "6F5D45C5-E76E-CDC8-52D5-D2821C128BE8" 6 -> "9DFF7162-FFBF-C149-C9D3-2E1DEBC40321" 7 -> "ADFD5395-CF7A-23EB-4FB4-F1F7DA85D9C3" 8 -> "B0D9900C-B058-E7FA-4C31-D85F18B9C4E2" 9 -> "CE375B52-7D0B-7DF0-AA3E-EB0AD85BEBFE" 10 -> "CEBACCDA-8950-C6B2-7456-D077BA82AA5D" 11 -> "EC83FAEB-1A42-FF16-EEB2-CF021EF38EBF" ============================================================================= "start 0 0 files downloaded successfully\n" Could not open "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/disabledElements.info" Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/06485695-DEE2-1383-A575-E5AABA05DCCD Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/0808A8EF-125F-1382-18D4-65B7997BB794 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/154ACCDA-8950-C6B2-7456-DAB6BA82AA5D Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/385FE362-ADFD-CE55-95C0-4E63560EFA29 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/6F5D45C5-E76E-CDC8-52D5-D2821C128BE8 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/9DFF7162-FFBF-C149-C9D3-2E1DEBC40321 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/ADFD5395-CF7A-23EB-4FB4-F1F7DA85D9C3 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/B0D9900C-B058-E7FA-4C31-D85F18B9C4E2 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/CE375B52-7D0B-7DF0-AA3E-EB0AD85BEBFE Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/CEBACCDA-8950-C6B2-7456-D077BA82AA5D Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/EC83FAEB-1A42-FF16-EEB2-CF021EF38EBF Registering: An app to download structures from the Protein Data Bank Registering: PDB Download Registering: This element contains three exporters (*xyz, *.pdb, *.mol2) to easily export models from SAMSON Registering: Protein Data Bank (*.pdb) Registering: XYZ (*.xyz) Registering: Mol2 (*.mol2) Registering: This element is used to generate an empty element from a template and gain time on this creation process. Registering: SEAElementGeneratorApp : SAMSON Element generator pro tip: modify me Registering: This element contains three importers (*xyz, *.mol2, *.pdb [with aliases: *.pdb1, ..., *.pdb6, *.ent, *.vdb]) to easily load models into SAMSON Registering: Protein Data Bank (*.pdb4) Registering: Protein Data Bank (*.ent) Registering: Protein Data Bank (*.pdb5) Registering: VIPERdb, PDB format (*.vdb) Registering: Protein Data Bank (*.pdb6) Registering: XYZ (*.xyz) Registering: Protein Data Bank (*.pdb) Registering: Mol2 (*.mol2) Registering: Protein Data Bank (*.pdb1) Registering: Protein Data Bank (*.pdb2) Registering: Protein Data Bank (*.pdb3) Registering: This element is used to generate UUID directly from SAMSON in one click. Registering: UUID Genenerator : SAMSON Element that generate UUID in one click. Registering: This element contains a set of essential editors for SAMSON, for example to select, translate, erase, rotate... Registering: Translation controller plane Registering: Torsion Registering: Ruler Registering: Delegate Registering: Translation controller center GUI Registering: Rotation controller axis Registering: Translation controller plane GUI Registering: Rotation controller axis GUI Registering: Angle Registering: Atom-atom distance Registering: Atom name Registering: Translation controller axis Registering: Translation controller center Registering: Translation Registering: Eraser Registering: Rotation controller Registering: Translation controller axis GUI Registering: Bond order Registering: Group name Registering: Translation controller Registering: Move camera Registering: Atom creator Registering: Rotation controller track-ball GUI Registering: Bond length Registering: Rotation controller track-ball Registering: Rectangle selection Registering: Lasso selection Registering: Point selection Registering: Rotation Registering: SAMSON document exporters (*.sam and *.samx) Registering: SAMSON Documents (*.samx) Registering: SAMSON Documents (*.sam) Registering: SAMSON document importers (*.sam and *.samx) Registering: SAMSON Documents (*.samx) Registering: SAMSON Documents (*.sam) Registering: This element is used to package and validate an elment you developed and wanted to publish. Registering: SEAElementPackagerApp : SAMSON Element generator pro tip: modify me Registering: This element is a group called default visual models to easily display different molecule visualizations in SAMSON Registering: Gaussian surface Registering: Ball and stick Registering: Ball-and-stick Registering: Van der Waals Registering: Lines Registering: Licorice Registering: Lines Registering: Van der Waals Registering: Gaussian surface Registering: Licorice Registering: A visual model to represent secondary structure Registering: Secondary structure Registering: SAMSON Base - Data Model - App Registering: App Registering: SAMSON Base - Data Model - Color Registering: Color scheme per chain ID Registering: Constant color scheme Registering: Color scheme per temperature factor Registering: CPK color scheme Registering: Color scheme per residue sequence number Registering: Color scheme per residue type Registering: Color scheme per partial charge Registering: Color scheme per secondary structure type Registering: Color scheme per occupancy Registering: Color scheme per formal charge Registering: SAMSON Base - Data Model - Data Graph Registering: Data graph node Registering: Node group Registering: Data graph node color scheme Registering: SAMSON Base - Data Model - Document Registering: Label Registering: Camera Registering: Layer Registering: Document Registering: SAMSON Base - Data Model - Structural Model Registering: Molecule Registering: Backbone Registering: Atom Registering: Segment Registering: Bond Registering: Side chain Registering: Path Registering: Chain Registering: Structural model Registering: Grid Registering: Structural particle Registering: Residue Registering: Structural nodes Registering: Conformation Registering: Pseudo-atom Registering: Structural group Registering: SAMSON Base - Data Model - Visual Model Registering: SAMSON Base - Data Model - Controller Registering: Controller Registering: Controller node Registering: SAMSON Base - GUI - DataGraph Registering: SAMSON Base - GUI - Document Registering: The GUI of a camera Registering: The GUI of a layer Registering: SAMSON Base - GUI - Editor Registering: Editor Registering: SAMSON Base - GUI - Inspector Registering: Inspector - SBQuantity::mass Factory Registering: Inspector - SBQuantity::length Factory Registering: Inspector - Bool Factory Registering: Inspector - Node Factory Registering: Inspector - SBBond::BondType Factory Registering: Inspector - SBQuantity::dimensionless Factory Registering: Inspector - int Factory Registering: Inspector - SBNode::Type Factory Registering: Inspector - double Factory Registering: Inspector - SBResidue::ResidueType Factory Registering: Inspector - std::string Factory Registering: Inspector - float Factory Registering: Inspector - SBQuantity::second Factory Registering: Inspector - unsigned short Factory Registering: Inspector - SBPosition3 Factory Registering: Inspector - short Factory Registering: Inspector - char Factory Registering: Inspector - SBVector3 Factory Registering: Inspector - SBQuantity::dimensionless Factory Registering: Inspector - unsigned int Factory Registering: Inspector - Atom Factory Registering: Inspector - SBResidue::SecondaryStructureType Factory Registering: Inspector - SBPath::AnimationType Factory Registering: Inspector - SBElement::Type Factory Registering: Inspector - SBQuantity::time Factory Registering: Inspector - char Factory Registering: SAMSON Base - GUI - Structural model Registering: The GUI of an atom Registering: The GUI of a structural model Registering: The GUI of a structural model conformation Registering: The GUI of a bond Registering: The GUI of a structural model conformation Registering: SAMSON Base - Facade - SAMSON Registering: The SAMSON Facade PDBDowloader: Gzip Importer is not installed - switching off its functionality PDBDowloader: PDBx/mmCIF Importer is not installed - switching off its functionality PDBDowloader: MMTF Importer is not installed - switching off its functionality libpng warning: iCCP: known incorrect sRGB profile QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range b, Ununoctium a, Ununoctium QColor::setRgb: RGB parameters out of range libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile SBIWebService::downloadElementXMLFile : WebService is disabled abort SBIWebService::downloadElementXMLFile : WebService is disabled abort ============================================================================= Allowed elements in database: ----------------------------------------------------------------------- - "elementName" "Secondary structure on GPUs" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "06485695-DEE2-1383-A575-E5AABA05DCCD" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SDK Element Packager" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "0808A8EF-125F-1382-18D4-65B7997BB794" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SAMSON Visual Models" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "154ACCDA-8950-C6B2-7456-DAB6BA82AA5D" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "Basic importers" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "385FE362-ADFD-CE55-95C0-4E63560EFA29" - "elementVersion" "0.7.7" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "Protein Data Bank Downloader" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "6F5D45C5-E76E-CDC8-52D5-D2821C128BE8" - "elementVersion" "0.7.4" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SAMSON Format Exporter" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "9DFF7162-FFBF-C149-C9D3-2E1DEBC40321" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SDK UUID Generator" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "ADFD5395-CF7A-23EB-4FB4-F1F7DA85D9C3" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SDK Element Generator" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "B0D9900C-B058-E7FA-4C31-D85F18B9C4E2" - "elementVersion" "0.7.1" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SAMSON Format importers" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "CE375B52-7D0B-7DF0-AA3E-EB0AD85BEBFE" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SAMSON Editors" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "CEBACCDA-8950-C6B2-7456-D077BA82AA5D" - "elementVersion" "0.7.3" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "Basic exporters" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "EC83FAEB-1A42-FF16-EEB2-CF021EF38EBF" - "elementVersion" "0.7.2" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ============================================================================= QPixmap::scaled: Pixmap is a null pixmap libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile "File" "File" "Edit" "Edit" "App" QLayout: Attempting to add QLayout "" to SBGWidgetOnExit "", which already has a layout SBIWebService::sendEnd : WebService is disabled abortI think the problem might be here:
SBGPath::getDevelopperElementPath() = /Elements, but as I said in .config the path is absolute:/home/user/.OneAngstrom/SAMSON/DEVELOPERBest regards,
Elisa
-
Ok can you check the file ~/.config/NANO-D/KEY_SOFTWARE_INFO.conf
If it does not exist you can copy the one inside ~/.config/NANO-D/ there.
If it exists, please verify the definition of the variable KEY_DEVELOPPER_DATA_PATH also,Im sorry was sure you used SAMSON 0.8.0 or more.
Jocelyn
-
Hi!
That was it!! The file on ~/.config/NANO-D was missing some of the variables as the one in ~/.config/OneAngstrom, so I copied it over.
Thank you very much!
Elisa
-
You welcome, sorry for the issue, we will relase the new installer soon
-
Looking forward to it!
By the way, do you know if there are any problems with the following code on Linux?
return QPixmap(QString::fromStdString(SB_ELEMENT_PATH + "/Resource/icons/break.png"));Editor's icon are not displayed on Linux, but they do work fine in our Windows version.
Best regards,
Elisa
-
@elisa Usually this is due to the case sensitivity on Linux, could you, please verify the name of the file.
-
You are totally right, @DmitriyMarin, we were mixing cases!!
-
@elisa A common problem due to Windows being case-insensitive. :)
