GROMACS Wizard issue



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  • My Gromacs session is not working properly. It is always giving the same error.
    Sorry couldn't backup C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp to ./#C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp.1#
    8 out of 8 lines of specbond.dat converted successfully
    Opening force field file ./amber99sb-ildn.ff/aminoacids.arn
    Opening force field file ./amber99sb-ildn.ff/dna.arn
    Opening force field file ./amber99sb-ildn.ff/rna.arn



  • Hi Sudhir,

    "Sorry couldn't backup C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp to ./#C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp.1# "

    This should be a warning, or it says you it is an error ?

    For:
    "8 out of 8 lines of specbond.dat converted successfully
    Opening force field file ./amber99sb-ildn.ff/aminoacids.arn
    Opening force field file ./amber99sb-ildn.ff/dna.arn
    Opening force field file ./amber99sb-ildn.ff/rna.arn"

    It seems this is normal. Could you send us the whole log please ?



  • It is saying it as a problem. Backing up of file is working anymore. Rest of the log is normal but it got stuck at this point and then nothing works.


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