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    GROMACS Wizard issue

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    • Admin
      Admin last edited by

      This new topic is used to move a post from another topic.

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      • S
        sudhir last edited by

        My Gromacs session is not working properly. It is always giving the same error.
        Sorry couldn't backup C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp to ./#C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp.1#
        8 out of 8 lines of specbond.dat converted successfully
        Opening force field file ./amber99sb-ildn.ff/aminoacids.arn
        Opening force field file ./amber99sb-ildn.ff/dna.arn
        Opening force field file ./amber99sb-ildn.ff/rna.arn

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        • Yassine
          Yassine last edited by

          Hi Sudhir,

          "Sorry couldn't backup C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp to ./#C:/Users/Structure/AppData/Local/OneAngstrom/SAMSON-Data/0.8.5/Scratch/GROMACS/GeneratedFiles/MODEL_prepared_model_Ion_chain_C_pr.itp.1# "

          This should be a warning, or it says you it is an error ?

          For:
          "8 out of 8 lines of specbond.dat converted successfully
          Opening force field file ./amber99sb-ildn.ff/aminoacids.arn
          Opening force field file ./amber99sb-ildn.ff/dna.arn
          Opening force field file ./amber99sb-ildn.ff/rna.arn"

          It seems this is normal. Could you send us the whole log please ?

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          • S
            sudhir last edited by

            It is saying it as a problem. Backing up of file is working anymore. Rest of the log is normal but it got stuck at this point and then nothing works.

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