Install fails for Linux
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I am following the documentation for developing elements in Linux. All steps work except the install step, where I get an error from the cmake:
[build] -- Install configuration: "Debug" [build] -- Installing: /Elements/DDA2A078-1AB6-96BA-0D14-EE1717632D7A/Data [build] CMake Error at SEElement/cmake_install.cmake:44 (file): [build] file INSTALL cannot make directory [build] "/Elements/DDA2A078-1AB6-96BA-0D14-EE1717632D7A/Data": No such file or [build] directory [build] Call Stack (most recent call first): [build] cmake_install.cmake:37 (include)I have go through the documentation several times and if I am forgetting to set some environmental variable I am not finding which one.
In which folder should the element be copied to? Perhaps it was not created when installing the SDK (I installed it locally)?
Thanks and best regards,
Elisa
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Sorry,
There is an issue with the new Installer you may solve it in 2 steps :
Step 1 :
edit this file ~/.config/OneAngstrom/KEY_SOFTWARE_INFO.conf
The file contains that line :KEY_DEVELOPER_DATA_PATH=/........./DEVELOPER
change the variable name KEY_DEVELOPER_DATA_PATH to KEY_DEVELOPPER_DATA_PATH
You can also duplicate it with the 2 different spellingsStep 2:
edit this file ~/OneAngstrom/SDK/0.8.1/cmake/SDKDeveloperDefinitions.cmake
The file contains that line : FILE( TO_CMAKE_PATH "....." CMAKE_SAMSON_DEVELOPER_DATA_PATH )
change the variable name CMAKE_SAMSON_DEVELOPER_DATA_PATH to CMAKE_SAMSON_DEVELOPPER_DATA_PATHHope it will solve the issue.
Jocelyn
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Hi,
Thanks for your quick reply! It did solve it, now it builds and installs properly. Unfortunately neither SAMSON nor the SDK seem to fetch the app, it just doesn't appear on SAMSON and there is no mention of it on the log. I also try with a new empty App, and same thing happen. Do you have some idea where might be the problem?
Elisa
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Can you please check if it installs well inside ~/.OneAngstrom/SAMSON/DEVELOPER/Elements/{UUID of your element}
The line inside KEY_SOFTWARE_INFO.conf containing KEY_DEVELOPPER_DATA_PATH refers to this path : ~/.OneAngstrom/SAMSON/DEVELOPER ?
Jocelyn
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Yes, it is installed there, and that's the path where KEY_DEVELOPPER_DATA_PATH is pointed too (I also left KEY_DEVELOPER_DATA_PATH pointing there, just in case).
Elisa
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First : make sure theses variables contains the full path and not ~/.....
Second : Not sure at all, did you reboot after modifying the conf file? I don't know how linux deals with internaly.Jocelyn
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Hi,
Yes, the variables contain the full path. I rebooted and reinstalled the SDK, just in case (modified again the cmake file), but still it is not working for my App or for a newly created App. I am using 0.7.0, by the way, and Ubuntu 16.04 LTS.
Edit: here is what's log to the console when I run the SDK, no mention to the developed Apps:
libpng warning: iCCP: known incorrect sRGB profile =============== SBGPath summary infos ================ =============== > SBGPath::getSAMSONPath() = /home/user/OneAngstrom/SAMSON-Application/0.7.0 > SBGPath::getSDKPath() = . =============== > SBGPath::getUserDataPath() = /home/user/Documents/OneAngstrom/SAMSON > SBGPath::getUserElementPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Elements > SBGPath::getUserElementDataPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Data/Elements > SBGPath::getUserDownloadedElementPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Download/Elements =============== > SBGPath::getDevelopperDataPath() = > SBGPath::getDevelopperElementPath() = /Elements > SBGPath::getDevelopperElementPackagedPath() = /Connect/Elements =============== > SBGPath::getBinaryPath() = ./SAMSON-Debug/Binaries =============== > SBGPath::getCurrentSkinPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default > SBGPath::getCursorPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Cursors > SBGPath::getIconPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Icons > SBGPath::getImagePath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Images > SBGPath::getSoundPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Sounds > SBGPath::getSplashScreenPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/SplashScreens > SBGPath::getStylePath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/StyleSheets =============== > SBGPath::getInterfacePath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Interface > SBGPath::getScratchPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch > SBGPath::getScratchElementPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements > SBGPath::getScratchUpdatesPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Updates > SBGPath::getShaderPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Shaders > SBGPath::getTranslationPath() = /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Translations =============== SBGPath summary infos ================ "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Cursors" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Icons" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Elements" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Shaders" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/Sounds" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/SplashScreens" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Skins/Default/StyleSheets" "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Resource/Translations" Disabling SBIWebService SBIWebService::downloadElementXMLFile : WebService is disabled abort ============================================================================= Allowed elements ids in database: 1 -> "06485695-DEE2-1383-A575-E5AABA05DCCD" 2 -> "0808A8EF-125F-1382-18D4-65B7997BB794" 3 -> "154ACCDA-8950-C6B2-7456-DAB6BA82AA5D" 4 -> "385FE362-ADFD-CE55-95C0-4E63560EFA29" 5 -> "6F5D45C5-E76E-CDC8-52D5-D2821C128BE8" 6 -> "9DFF7162-FFBF-C149-C9D3-2E1DEBC40321" 7 -> "ADFD5395-CF7A-23EB-4FB4-F1F7DA85D9C3" 8 -> "B0D9900C-B058-E7FA-4C31-D85F18B9C4E2" 9 -> "CE375B52-7D0B-7DF0-AA3E-EB0AD85BEBFE" 10 -> "CEBACCDA-8950-C6B2-7456-D077BA82AA5D" 11 -> "EC83FAEB-1A42-FF16-EEB2-CF021EF38EBF" ============================================================================= "start 0 0 files downloaded successfully\n" Could not open "/home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/disabledElements.info" Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/06485695-DEE2-1383-A575-E5AABA05DCCD Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/0808A8EF-125F-1382-18D4-65B7997BB794 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/154ACCDA-8950-C6B2-7456-DAB6BA82AA5D Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/385FE362-ADFD-CE55-95C0-4E63560EFA29 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/6F5D45C5-E76E-CDC8-52D5-D2821C128BE8 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/9DFF7162-FFBF-C149-C9D3-2E1DEBC40321 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/ADFD5395-CF7A-23EB-4FB4-F1F7DA85D9C3 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/B0D9900C-B058-E7FA-4C31-D85F18B9C4E2 Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/CE375B52-7D0B-7DF0-AA3E-EB0AD85BEBFE Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/CEBACCDA-8950-C6B2-7456-D077BA82AA5D Extracting /home/user/.local/share/OneAngstrom/SAMSON-Data/0.7.0/Scratch/Elements/EC83FAEB-1A42-FF16-EEB2-CF021EF38EBF Registering: An app to download structures from the Protein Data Bank Registering: PDB Download Registering: This element contains three exporters (*xyz, *.pdb, *.mol2) to easily export models from SAMSON Registering: Protein Data Bank (*.pdb) Registering: XYZ (*.xyz) Registering: Mol2 (*.mol2) Registering: This element is used to generate an empty element from a template and gain time on this creation process. Registering: SEAElementGeneratorApp : SAMSON Element generator pro tip: modify me Registering: This element contains three importers (*xyz, *.mol2, *.pdb [with aliases: *.pdb1, ..., *.pdb6, *.ent, *.vdb]) to easily load models into SAMSON Registering: Protein Data Bank (*.pdb4) Registering: Protein Data Bank (*.ent) Registering: Protein Data Bank (*.pdb5) Registering: VIPERdb, PDB format (*.vdb) Registering: Protein Data Bank (*.pdb6) Registering: XYZ (*.xyz) Registering: Protein Data Bank (*.pdb) Registering: Mol2 (*.mol2) Registering: Protein Data Bank (*.pdb1) Registering: Protein Data Bank (*.pdb2) Registering: Protein Data Bank (*.pdb3) Registering: This element is used to generate UUID directly from SAMSON in one click. Registering: UUID Genenerator : SAMSON Element that generate UUID in one click. Registering: This element contains a set of essential editors for SAMSON, for example to select, translate, erase, rotate... Registering: Translation controller plane Registering: Torsion Registering: Ruler Registering: Delegate Registering: Translation controller center GUI Registering: Rotation controller axis Registering: Translation controller plane GUI Registering: Rotation controller axis GUI Registering: Angle Registering: Atom-atom distance Registering: Atom name Registering: Translation controller axis Registering: Translation controller center Registering: Translation Registering: Eraser Registering: Rotation controller Registering: Translation controller axis GUI Registering: Bond order Registering: Group name Registering: Translation controller Registering: Move camera Registering: Atom creator Registering: Rotation controller track-ball GUI Registering: Bond length Registering: Rotation controller track-ball Registering: Rectangle selection Registering: Lasso selection Registering: Point selection Registering: Rotation Registering: SAMSON document exporters (*.sam and *.samx) Registering: SAMSON Documents (*.samx) Registering: SAMSON Documents (*.sam) Registering: SAMSON document importers (*.sam and *.samx) Registering: SAMSON Documents (*.samx) Registering: SAMSON Documents (*.sam) Registering: This element is used to package and validate an elment you developed and wanted to publish. Registering: SEAElementPackagerApp : SAMSON Element generator pro tip: modify me Registering: This element is a group called default visual models to easily display different molecule visualizations in SAMSON Registering: Gaussian surface Registering: Ball and stick Registering: Ball-and-stick Registering: Van der Waals Registering: Lines Registering: Licorice Registering: Lines Registering: Van der Waals Registering: Gaussian surface Registering: Licorice Registering: A visual model to represent secondary structure Registering: Secondary structure Registering: SAMSON Base - Data Model - App Registering: App Registering: SAMSON Base - Data Model - Color Registering: Color scheme per chain ID Registering: Constant color scheme Registering: Color scheme per temperature factor Registering: CPK color scheme Registering: Color scheme per residue sequence number Registering: Color scheme per residue type Registering: Color scheme per partial charge Registering: Color scheme per secondary structure type Registering: Color scheme per occupancy Registering: Color scheme per formal charge Registering: SAMSON Base - Data Model - Data Graph Registering: Data graph node Registering: Node group Registering: Data graph node color scheme Registering: SAMSON Base - Data Model - Document Registering: Label Registering: Camera Registering: Layer Registering: Document Registering: SAMSON Base - Data Model - Structural Model Registering: Molecule Registering: Backbone Registering: Atom Registering: Segment Registering: Bond Registering: Side chain Registering: Path Registering: Chain Registering: Structural model Registering: Grid Registering: Structural particle Registering: Residue Registering: Structural nodes Registering: Conformation Registering: Pseudo-atom Registering: Structural group Registering: SAMSON Base - Data Model - Visual Model Registering: SAMSON Base - Data Model - Controller Registering: Controller Registering: Controller node Registering: SAMSON Base - GUI - DataGraph Registering: SAMSON Base - GUI - Document Registering: The GUI of a camera Registering: The GUI of a layer Registering: SAMSON Base - GUI - Editor Registering: Editor Registering: SAMSON Base - GUI - Inspector Registering: Inspector - SBQuantity::mass Factory Registering: Inspector - SBQuantity::length Factory Registering: Inspector - Bool Factory Registering: Inspector - Node Factory Registering: Inspector - SBBond::BondType Factory Registering: Inspector - SBQuantity::dimensionless Factory Registering: Inspector - int Factory Registering: Inspector - SBNode::Type Factory Registering: Inspector - double Factory Registering: Inspector - SBResidue::ResidueType Factory Registering: Inspector - std::string Factory Registering: Inspector - float Factory Registering: Inspector - SBQuantity::second Factory Registering: Inspector - unsigned short Factory Registering: Inspector - SBPosition3 Factory Registering: Inspector - short Factory Registering: Inspector - char Factory Registering: Inspector - SBVector3 Factory Registering: Inspector - SBQuantity::dimensionless Factory Registering: Inspector - unsigned int Factory Registering: Inspector - Atom Factory Registering: Inspector - SBResidue::SecondaryStructureType Factory Registering: Inspector - SBPath::AnimationType Factory Registering: Inspector - SBElement::Type Factory Registering: Inspector - SBQuantity::time Factory Registering: Inspector - char Factory Registering: SAMSON Base - GUI - Structural model Registering: The GUI of an atom Registering: The GUI of a structural model Registering: The GUI of a structural model conformation Registering: The GUI of a bond Registering: The GUI of a structural model conformation Registering: SAMSON Base - Facade - SAMSON Registering: The SAMSON Facade PDBDowloader: Gzip Importer is not installed - switching off its functionality PDBDowloader: PDBx/mmCIF Importer is not installed - switching off its functionality PDBDowloader: MMTF Importer is not installed - switching off its functionality libpng warning: iCCP: known incorrect sRGB profile QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range QColor::setRgb: RGB parameters out of range b, Ununoctium a, Ununoctium QColor::setRgb: RGB parameters out of range libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile SBIWebService::downloadElementXMLFile : WebService is disabled abort SBIWebService::downloadElementXMLFile : WebService is disabled abort ============================================================================= Allowed elements in database: ----------------------------------------------------------------------- - "elementName" "Secondary structure on GPUs" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "06485695-DEE2-1383-A575-E5AABA05DCCD" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SDK Element Packager" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "0808A8EF-125F-1382-18D4-65B7997BB794" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SAMSON Visual Models" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "154ACCDA-8950-C6B2-7456-DAB6BA82AA5D" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "Basic importers" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "385FE362-ADFD-CE55-95C0-4E63560EFA29" - "elementVersion" "0.7.7" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "Protein Data Bank Downloader" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "6F5D45C5-E76E-CDC8-52D5-D2821C128BE8" - "elementVersion" "0.7.4" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SAMSON Format Exporter" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "9DFF7162-FFBF-C149-C9D3-2E1DEBC40321" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SDK UUID Generator" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "ADFD5395-CF7A-23EB-4FB4-F1F7DA85D9C3" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SDK Element Generator" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "B0D9900C-B058-E7FA-4C31-D85F18B9C4E2" - "elementVersion" "0.7.1" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SAMSON Format importers" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "CE375B52-7D0B-7DF0-AA3E-EB0AD85BEBFE" - "elementVersion" "0.7.0" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "SAMSON Editors" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "CEBACCDA-8950-C6B2-7456-D077BA82AA5D" - "elementVersion" "0.7.3" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ----------------------------------------------------------------------- - "elementName" "Basic exporters" - "elementDeveloperID" "C682B30F-0D21-4CDB-B968-B72E225DDC8F" - "elementID" "EC83FAEB-1A42-FF16-EEB2-CF021EF38EBF" - "elementVersion" "0.7.2" - "checksumDebug" 0 - "checksumRelease" 0 - "elementDescription" "" - "elementOS" "" - "samsonVersion" "0.7.0" - "forceUpdate" false ----------------------------------------------------------------------- ============================================================================= QPixmap::scaled: Pixmap is a null pixmap libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile "File" "File" "Edit" "Edit" "App" QLayout: Attempting to add QLayout "" to SBGWidgetOnExit "", which already has a layout SBIWebService::sendEnd : WebService is disabled abortI think the problem might be here:
SBGPath::getDevelopperElementPath() = /Elements, but as I said in .config the path is absolute:/home/user/.OneAngstrom/SAMSON/DEVELOPERBest regards,
Elisa
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Ok can you check the file ~/.config/NANO-D/KEY_SOFTWARE_INFO.conf
If it does not exist you can copy the one inside ~/.config/NANO-D/ there.
If it exists, please verify the definition of the variable KEY_DEVELOPPER_DATA_PATH also,Im sorry was sure you used SAMSON 0.8.0 or more.
Jocelyn
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Hi!
That was it!! The file on ~/.config/NANO-D was missing some of the variables as the one in ~/.config/OneAngstrom, so I copied it over.
Thank you very much!
Elisa
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You welcome, sorry for the issue, we will relase the new installer soon
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Looking forward to it!
By the way, do you know if there are any problems with the following code on Linux?
return QPixmap(QString::fromStdString(SB_ELEMENT_PATH + "/Resource/icons/break.png"));Editor's icon are not displayed on Linux, but they do work fine in our Windows version.
Best regards,
Elisa
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@elisa Usually this is due to the case sensitivity on Linux, could you, please verify the name of the file.
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You are totally right, @DmitriyMarin, we were mixing cases!!
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@elisa A common problem due to Windows being case-insensitive. :)
