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    • A

      how to define ribbons color?
      SAMSON • • albert

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      DmitriyMarin

      Hi @albert ,

      There are several options for the colorization of structures or visual models (Ribbons is a visual model) based on chains:

      The colorization using color schemes. First, select the Ribbons visual model in the Document view that you would like to colorize. Then: Biology > Colorize > Chain ID or Chain (illustrative) (i.e. in the style of D.S.Goodsell)
      aedf2d1e-77e3-42cd-af72-51400ba6f73b-image.png
      You can also choose "Custom..." from the list and specify the color palette. The colorization with constant colors per chain. Choose a chain in the Document view. Set the color using Visualization > Colorize.

      See more in User guide - Colorizing and User guide - Visualizing.

    • Z

      Is there a way to export vector image?
      SAMSON • • Zilong

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      Admin

      Dear @Zilong

      It’s not currently possible to export vector images. However, you can change the image resolution in the preferences:

      Open the Preferences (Menu Interface > Preferences) In the Preferences, go to Interface > Captures to change capture settings, including the resolution.
    • C

      Autodock VINA extension fails to import SDF library
      SAMSON • • Chris 2

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      Admin

      Hi Chris, thanks again for reaching out! As discussed, this was caused by having ligands with multiple connected components, which Vina cannot dock. We will try to provide clearer error messages to prevent this. Thanks again!

    • C

      Visualizing hydrogen atoms
      SAMSON • • Chris 1

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      C

      Wonderful, thanks for the tip. It took a little adjustment for me to get familiar with Inspector to just show the new model without the C-H's, but this works well.

    • C

      Tips for depicting binding pockets?
      SAMSON • • Chris 1

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      C

      Great, thanks! I will also mess with transparency, etc. in order to see some interactions in more detail.

    • M

      Solvent Accessible Surface Visualization - surface properties?
      SAMSON • • Matthew 1

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      M

      Thank you for your quick response, it is much appreciated!

    • L

      Load and visualize a xyz trajectory frame by frame
      SAMSON • • Luis

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      L

      Great. Thanks @DmitriyMarin

    • O

      4k display support?
      SAMSON • • Oleksandr 0

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      Stephane

      Hello, high-resolution displays are not supported natively yet, but Windows 10 indeed allows you to change the settings. On my 4K monitor, I use the method explained there : https://blog.pauby.com/post/high-dpi-settings-windows-10/ , but I choose "System" instead of "Application". My system DPI adjustment is at 200% in Windows, and here is how it looks like:
      0_1612374085845_ce0855be-0ca8-49e4-a8fd-bbf45f42f1b6-image.png

      Could you please let me know if this works for you?

    • N

      Background/Visualization issues on 2015 Macintosh
      SAMSON • • Nick

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      1098
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      Admin

      Hi Nick, thanks for the posts, we've sent you messages about how to reach us for chat so we can help you.

    • J

      GROMACS Wizard doesn't show
      SAMSON • • James 0

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      1114
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      Admin

      Hi James, thanks for reporting this. We sent you an email to determine the issue.

    • M

      Problems with the visualization of molecules
      SAMSON • • Mizraim

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      M

      Okay, Thanks.

    • E

      Problem with deletions
      SAMSON • • Emmanuel

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      1409
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      DmitriyMarin

      Thank you @Emmanuel for reporting these issues. We have fixed them - the Elements will be updated automatically once you launch SAMSON.

    • E

      Problem with surface creation...
      SAMSON • • Emmanuel

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      1347
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      DmitriyMarin

      Dear @Emmanuel ,

      Thanks for reporting this issue! It's now fixed, and the fix will be available with SAMSON 2020 R2, which will be deployed in a few days.

    • E

      Problem with water selection
      SAMSON • • Emmanuel

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      1272
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      DmitriyMarin

      Dear @Emmanuel ,

      Thanks for reporting this issue! It's now fixed, and the fix will be available with SAMSON 2020 R2, which will be deployed in a few days.

    • E

      Crash with SAMSON
      SAMSON • • Emmanuel

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      1372
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      Admin

      Thanks for reporting this bug! It's now fixed, and the fix will be available with SAMSON 2020 R2, which will be deployed this monday (may 11, 2020).

    • A

      How to export a molecular structure as image file.
      SAMSON • • Ahsan

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      A

      Thanks Dear.

    • E

      Adenita does not show up in SAMSON interface
      SAMSON • • Enze

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      1500
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      Admin

      Adenita needs older versions of SAMSON because it hasn’t been updated yet (you can see this on the element page). You need to reinstall SAMSON and check the box “Install older versions” to install 0.8.5. Also, please check the requirements on the element page.

    • E

      Problem with Ramachandran Plot
      SAMSON • • Emmanuel

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      DmitriyMarin

      Currently, it is not possible because the selection filter functionality is not exposed to external elements. We will update it in the upcoming release of SAMSON.

    • E

      Colorize a protein
      SAMSON • • Emmanuel

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      DmitriyMarin

      @emmanuel
      For now, you can just reapply the Hydrophobicity color scheme (Biology menu > Colorize > Hydrophobicity).

    • P

      Create GMX data file, problem with GROMACS Model Generator
      SAMSON • • Patrik

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      P

      Yes, I could already run it.
      Thank you!