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    • D

      Trace on Ubuntu 24.04
      Getting started • • Dmitrii 0

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      DmitriyMarin

      Possibly, it is not supported with Cycles kernels (from Blender's Cycles) that we ship. We will try to see what we can do here. Or, maybe, the Cycles kernels we ship are not compatible with the CUDA version installed on your OS.

    • M

      How to show Atomtype Labels from GROMACS .gro File in SAMSON
      SAMSON • • Mattia Felice

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      DmitriyMarin

      Dear @Mattia-Felice ,

      Thank you for the feedback! We will consider this for the next releases of SAMSON.

      We will surely add more labeling possibilities in the next release.

      As for formats from ab initio packages, SAMSON currently supports only Molden and it loads only the molecular structure from it. But we can add the possibility to load other data from it as well.

    • E

      Symmetry Mate editor not seen after installation
      SAMSON Extensions • • Eva

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      Admin

      Awesome, thanks for letting us know!

    • G

      Fatal error trying to use Gromacs Wizard : gro file does not have the number of atoms on the second line
      SAMSON Extensions • • Guy

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      Stephane

      Ok thanks. I'm going to contact you by email for further exchange.

    • F

      Increase font and icons size
      Getting started • • Ferdinando

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      OneAngstrom

      @aaa Thank you for reporting your solution here!

    • Laëtitia

      Get the atom xyz file coordinates
      Modeling • • Laëtitia

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      Laëtitia

      oh you're right there is a 100 coefficient, it's giving me the coordinate in pm. Didn't think about that.
      thank you very much.

    • H

      Solved visibility of elements in the visual model
      Modeling • • Haichao

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      H

      This is already quite helpful, thank you!
      I will try and see if displayLineSweptSpheres solves the issue.
      I will post the solution when I've found it!
      Cheers,
      Haichao

    • E

      ElementGenerator not working
      Getting started • • Elisa

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      E

      In case someone else is in the same situation. I just finished porting our plugin to 0.7.0 and the only changes I had to make were in SAMSON::getProxy (the arguments have changed), and the call functions of the proxies (arguments of SBValue type used to be pointers, now they are passed by reference).

      We have still to test it to make sure all functionality is working, but so far it seems that was it.

      Regards,

      Elisa

    • Yassine

      Solved How to add new fields in the inspector for my custom class ?
      Modeling • • Yassine

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      Yassine

      Awesome !

      Thank you guys, you rock !

      Yassine

    • S

      problem of starting under openSUSE
      Getting started • • Shuguang

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      DmitriyMarin

      You don't need to upgrade your whole system; you can try to update it via the above-given commands which will update the packages installed on your system. And if glibc 2.33 is not available with the update you can try to install it from OpenSUSE Tumbleweed.

    • F

      Issues with starting SAMSON (Linux/pop-os/X11): Core dumped.
      Getting started • • Filipe

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      DmitriyMarin

      Great! I am glad that it worked!
      Do not hesitate to contact us if you have any questions or feedback.

    • C

      Visualizing hydrogen atoms
      SAMSON • • Chris 1

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      C

      Wonderful, thanks for the tip. It took a little adjustment for me to get familiar with Inspector to just show the new model without the C-H's, but this works well.

    • M

      Problems with the visualization of molecules
      SAMSON • • Mizraim

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      M

      Okay, Thanks.

    • E

      Setting pivot point in Arap path
      SAMSON Extensions • • Eva

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      E

      Thank you, Stephan. I will give it a try.

    • T

      How to compute molecular properties like logP & logD - hydrophobicity
      SAMSON Extensions • • Thanos

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      T

      @dmitriymarin Wow this is really great, thank you!!!

    • S

      saving PDB files of complexes in Autodock
      SAMSON Extensions • • sudhir

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      S

      @admin one pdb file having protein and ligand docked.

    • Ivan

      Open PDB protein model
      SAMSON • • Ivan

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      Ivan

      Thank you, Dmitriy. I will try later. I just tried to open pdb file in Windows, and in status bar got the message, that it "can''t open" my file. I will try to put the log here a bit later.

    • E

      Publishing an element questions (license + co-development)
      Apps • • Elisa

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      E

      Dear all,

      Thanks for the answers. it was very helpful, we would probably then choose BSD-3 to make sure we stay compatible with SAMSON.

      Best regards,

      Elisa

    • S

      autodock problem
      SAMSON Extensions • • sudhir 0

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      S

      Thanks a lot. Now it is working in the advanced element of AutoDock (normal one I did not check)
      Thank you

    • A

      Lennard Jones simulator, epsilon value
      Feature requests • • Andrea

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      DmitriyMarin

      Dear @Andrea ,

      We have updated the Lennard-Jones Interaction Model SAMSON Element, now you can set the smaller epsilon parameter. The SAMSON Element should be updated automatically once you launch SAMSON with an Internet connection.