Thank you so much sir....It really helped.

yes you are right both ways work fine.
I had a bug I was unaware of in a different position.

thx!

Actually I didn't explain well the case where the raise didn't worked for me as I expected. When you have two windows, with the first one locked and the second unlocked. If the raise function is called for the second unlocked window, it doesn't go on top of the first locked window.

For those who might interest, I found a simple solution. You need to temporarily lock the window, call the raise function then unlock the window.

Thank you Stephane for your quick answer !
Yassine

@stephane-redon I think it can be nice for the developers to be able to register more actions in the context menu. But it can also make the context menu too crowded. Perhaps, you can make something in the Preferences so that the users can select to add which actions to show in the context menu.

Actually, I am developing an app to convert a list of conformations to a path and vice versa for my work.
So I was thinking it can be useful to add an action in the context menu so that after selecting a list of conformations in the Document View, I would right-click and choose "Convert to Path". Do you have any suggestion to do it for this case?

Yes thanks. That's what I was looking for.

Hi @Stephane-Redon,

ah yes, it was the depth test. This solves it!

Thanks,
Haichao

Not instead, in addition: having, at the installation of the App, a list of pre-saved settings, with still the possibility to save and load your own settings.
-- for example, with the Crystal Creator App, having the 'diamond settings', the 'SiGe settings', or for ARPS, some classical configurations of Ef and Er : the '10x speed up settings', '5x speed up settings' ... --

Dear @Grigorii ,

Yes, currently, Adenita does not serialize/save its visual model when saving into a file. You need to reset it via Adenita.

Dear 闽乐 ,

We have fixed some possible issues in Adenita - it should be updated automatically for you. Could you please check whether it works for you?

Hello,

Although I have re-install Ubuntu with 200GB mounted in /, it still stoped around 29

When I run %df -l, it showed below

Filesystem 1K-blocks Used Available Use% Mounted on
udev 131770300 0 131770300 0% /dev
tmpfs 26361104 2888 26358216 1% /run
/dev/nvme0n1p2 191197068 11936596 169478456 7% /
tmpfs 131805512 46716 131758796 1% /dev/shm
tmpfs 5120 4 5116 1% /run/lock
tmpfs 131805512 0 131805512 0% /sys/fs/cgroup
/dev/loop0 9216 9216 0 100% /snap/canonical-livepatch/132
/dev/loop2 289280 289280 0 100% /snap/pymol-oss/98
/dev/loop1 113280 113280 0 100% /snap/core/12834
/dev/loop3 33152 33152 0 100% /snap/snapd/12704
/dev/loop4 63488 63488 0 100% /snap/core20/1405
/dev/loop5 66688 66688 0 100% /snap/gtk-common-themes/1515
/dev/loop6 254848 254848 0 100% /snap/gnome-3-38-2004/99
/dev/loop7 56832 56832 0 100% /snap/core18/2128
/dev/loop8 224256 224256 0 100% /snap/gnome-3-34-1804/72
/dev/nvme0n1p3 758522328 506548 719415232 1% /home
/dev/nvme0n1p1 9755312 5384 9749928 1% /boot/efi
/dev/nvme1n1p1 960379920 77856 911447640 1% /home2
/dev/loop9 52224 52224 0 100% /snap/snap-store/547
tmpfs 26361100 20 26361080 1% /run/user/125
tmpfs 26361100 44 26361056 1% /run/user/1000

I think it is not a space problem though, I don't know how to solve this problems.

please help,

Great, thanks! I will also mess with transparency, etc. in order to see some interactions in more detail.

Thank you for your quick response, it is much appreciated!

Hi Nick, thanks for the posts, we've sent you messages about how to reach us for chat so we can help you.

Yes, it would be useful to have the energy profile along the path. Not only the height of the barrier, but also its width, shape, etc.

Alternatively, you can do this without the Brenner interaction model but with the built-in minimization which uses the Universal Force Field (UFF) and the Add editor (shortcut: A) (it's Carbon by default).

First, you will need to modify SAMSON preferences (Ctrl+K):
-1- For the Add editor, disable the "Adjust hydrogens ..." option.
0_1600418725406_Preferences-Add-no-adjust-H.png

-2- For the Minimization, disable the "Warn me when hydrogens appear to be missing" warning to prevent it from poping-up on each new bond connection.
0_1600418739623_Preferences-Minimize-no-H-warning.png

Then you can apply the minimization: Home >Simulate > Minimize. Start connecting atoms in the nanotube and the graphene sheet using the Add editor (A) - to create a bond simply connect two atoms with this editor.

Indeed in the current version of the Gromacs Wizard, you will need to have a force field which allows for both biomolecules and CNTs. Then you can add such a force field in the settings of the module. However using a 'one-shot parameterization' (e.g. using the ATB server) will not work at the moment with the Gromacs Wizard.

Thanks Dear.

Dear @DmitriyMarin
Thank you for your reply!
Yes, that LAMMPS wizard would be wonderful.

Best regards,
Patrik Molnár

Hello,

The issue is that SAMSON was installed as Administor. Can you please try to activate User Access Control (UAC) so that Windows does not install SAMSON as admin? Here's a link about how to do that: https://www.technipages.com/windows-enable-disable-user-account-control-uac

Please set UAC to e.g. "Always notify" (you can set it back to the previous setting afterwards).

0_1586188022427_b58888db-0b85-4f3f-8459-6d51649a09ab-image.png

Then, please restart your computer, and install SAMSON again.

Please let me know how this goes.

Thanks,

Stephane

Thank you so much for helping me. I tried to link exactly Qt5.12.5 (my own version is 5.14.1) so it works now. Again, thank you so much.

Best regards,

Dong.